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Job SOPMA (ID: 7974) is running on NPS@ server (started on Mon Dec 1 20:17:29 CET 2003).
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In your publication cite :
NPS@: Network Protein Sequence Analysis
TIBS 2000 March Vol. 25, No 3 [291]:147-150
Combet C., Blanchet C., Geourjon C. and Deléage G.

SOPMA result for : UNK_79740

Abstract Geourjon, C. & Deléage, G., SOPMA: Significant improvement in protein secondary structure prediction by consensus prediction from multiple alignments., Cabios (1995) 11, 681-684

View SOPMA in: [MPSA (Mac, UNIX) , About...] [AnTheProt (PC) , Download...] [HELP] 

        10        20        30        40        50        60        70
         |         |         |         |         |         |         |
ATGGCCGAATCGGACAAAATAAACATCGATTCGATCATCCAGCGCMAESDKINIDSIIQRCTTTTGGAAG
ccccccccccccchhhhhhhhhhhhhttcccttcceeeehccccchhhhcccchhheeetcccccccccc
TGAAGGGCTCAAGACCTGGTAAAAATGTTCAGTTALLEVKGSRPGKNVQLACTGAGCAAGAGATTCGAGG
ccctttcceehttcccttcchhhhhttcccttceeeeeettccttcceeeeeccccccttttcceecccc
ATTGTGTCTAAAATCTCGAGAAATCTEQEIRGLCLKSREITTTCTTAGTCAGCCAATACTACTGGAGCTG
cccccccchhhhhhhhttttchhhhhhhhhtteeecccceeeeeccttcccccchhhhhectttcccccc
GAGGCACCCCTCAAGFLSQPILLELEAPLKATTTGTGGTGATGTTCATGGTCAGTACTATGACCTGCTCA
ccccceeeehhhhttcccccheehhccccccccccccccccccceeecccccttceeecttccettccct
GGCTTICGDVHGQYYDLLRLTTTGAGTATGGAGGATATCCACCAGAGAGTAACTACCTATTTCTGFEYGG
tcceeeetcccccheeeeeeeeccccccccccccchhhhhhhhttccccchhhhhhcccccccccccttc
YPPESNYLFLGGAGACTATGTTGACAGAGGCAAGCAGTCACTGGAGACCATCTGCGDYVDRGKQSLETIC
ccttcceeeettccceeettccccettttcccttcccceeettcccceeeeettccceehttcchheeee
CTGCTGCTTGCTTACAAGATCAAATATCCAGAGAACTTCTTTCTTLLLAYKIKYPENFFLCTCAGAGGAA
eccccccccccchhhhtthhhhhhhhhhhttttcceeecccceeeeeehhhtccctteeeeeettttcch
ACCATGAATGTGCCTCAATCAACAGGATATATGGALRGNHECASINRIYGTTTTATGATGAATGTAAAAG
hhhhttccttccccchhhhhhhhtttcceehttcccccccchhhhceeetcccccttccchhhhhhhhht
ACGTTATAACATCAAGCTCTGGAAAFYDECKRRYNIKLWKACATTCACAGACTGTTTCAACTGCTTGCCA
tttcchhhhhhhhhttccccccchhhhhhhtthhceeehhhhhhhhhcttccttcceeeetttcccccee
GTAGCTGCTATTGTGTFTDCFNCLPVAAIVGATGAAAAGATTTTTTGTTGTCATGGAGGTCTTTCTCCAG
tccccttceeeccccceechttccchheeehctthhhttcceeeetcccceeeetccccceeeeeeectt
ACCTGDEKIFCCHGGLSPDLCAATCAATGGAACAGATTCGGCGTGTGATGAGGCCTACGGATGTCQSMEQ
ccccccceeeeettcccchhhhhhhhhtttchhttccccccccccccccccccceeettcccccchhhhh
IRRVMRPTDVCCTGACCAGGGTTTGCTGTGTGATCTGCTCTGGGCTGACCCTGATPDQGLLCDLLWADPD
hhhhccttceeettccctttcceeeeecccccceeecceettcccccceeetcccccthhhhhheecctt
AAAGATGTCATGGGCTGGGGAGAGAATGATCGTGGTGTTTCCTTCKDVMGWGENDRGVSFACCTTCGGGT
hhttccccccttcccccccccccccettceetttcccceeeeecccheeeecccttteeeeeeeccttcc
CTGATGTCGTGGCCAAGTTTTTGCACAAACATGACTFGSDVVAKFLHKHDATGGATCTCATATGCAGAGC
eetccccccccccccttcccccchhhhhhhhttcceetchhhhhhhhctttttcceeeeehcttcctttc
CCATCAGGTGGTGGAGGATGGCTACMDLICRAHQVVEDGYGAGTTCTTTGCGAAGAGGCAGTTAGTCACG
eeeeettccccccccccccccchhhhhhhhhhhheehttccccceeeeeccccttttccttccccccett
CTTTTCTCTGCTCCCEFFAKRQLVTLFSAPAACTACTGCGGCGAGTTTGACAATGCAGGTGCCATGATGA
ceeeeeeccccccchhhhhttheeeeecccccceeetccccccccccccchhettccccccceetccccc
GTGTTNYCGEFDNAGAMMSVGATGAGACCCTTATGTGCTCATTTCAGATTCTGAAACCAGCAGAGDETLM
ccccceeecccctttheeeetcccccceeeeeccccccceeeeccttcccctthhhhhhttttttchhee
CSFQILKPAEAAGAAGGTGCTGTCATATGGCGGCGCTGGAGGATTTGGGAACAGCKKVLSYGGAGGFGNS
hhhhhcchhhhhttttccccccceeeccccccccccccccccceecttcchhttcceeeeettccccccc
AGACCTGTAACTCCTCCTCGGAACACAGCCAAGGGTGGCAAAGCCRPVTPPRNTAKGGKAAAGAAATAAK
ttcccccccccccccccccccchhhhttccctttccccchhttccccccccccccttcchhhhhhhhhhh
K
h

Sequence length :  1331

SOPMA :
   Alpha helix     (Hh) :   259 is  19.46%
   310  helix       (Gg) :     0 is   0.00%
   Pi helix        (Ii) :     0 is   0.00%
   Beta bridge     (Bb) :     0 is   0.00%
   Extended strand (Ee) :   243 is  18.26%
   Beta turn       (Tt) :   226 is  16.98%
   Bend region     (Ss) :     0 is   0.00%
   Random coil     (Cc) :   603 is  45.30%
   Ambigous states (?)  :     0 is   0.00%
   Other states         :     0 is   0.00%


Parameters :
   Window width         :  17
   Similarity threshold :   8
   Number of states     :   4

Prediction result file (text): [SOPMA]
Intermediate result file (text): [BLASTP on SWISS-PROT]

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